Développement d’une solution d’informatique décisionnelle au sein de Guérin et Guinnard électricité SA

Ce travail a pour mission la création d’une solution d’informatique décisionnelle au sein de Guérin et Guinnard électricité SA. Comme décrit dans le mandat du travail de Bachelor, ce projet est constitué de plusieurs objectifs. Le principal est celui de délivrer une application à l’entreprise, utile à la prise de décisions. Les objectifs accessoires sont l’établissement d’un état des lieux du matériel informatique et du système d’information, une analyse des besoins selon les informations dont l’entreprise dispose ou peut disposer et l’élaboration d’une solution pour la création d’une application. (Pot, Mandat du travail de Bachelor, 2013) La méthodologie consiste, dans un premier temps, à établir à un état des lieux du système d’informations. Avec les informations disponibles, une solution est conçue en collaboration avec les exigences de l’entreprise. La dernière étape consiste à la création de l’application et à son instauration dans l’entreprise. Le résultat étant en accord avec les objectifs ci-dessus, de nombreux constats ont été observés quant à la gestion de l’information au sein de l’entreprise, ce qui permet l’élaboration de recommandations quant à l’importance de la saisie, la création d’informations supplémentaires et pertinentes. Ce travail permet également à l’entreprise d’avoir une importante prise de conscience et une remise en question face à son système d’information

Covariance and Correlation Kernels on a Graph in the Generalized Bag-of-Paths Formalism

This work derives closed-form expressions computing the expectation of co-presence and of number of co-occurrences of nodes on paths sampled from a network according to general path weights (a bag of paths). The underlying idea is that two nodes are considered as similar when they often appear together on (preferably short) paths of the network. The different expressions are obtained for both regular and hitting paths and serve as a basis for computing new covariance and correlation measures between nodes, which are valid positive semi-definite kernels on a graph. Experiments on semi-supervised classification problems show that the introduced similarity measures provide competitive results compared to other state-of-the-art distance and similarity measures between nodes

Randomized Optimal Transport on a Graph: framework and new distance measures

The recently developed bag-of-paths (BoP) framework consists in setting a Gibbs-Boltzmann distribution on all feasible paths of a graph. This probability distribution favors short paths over long ones, with a free parameter (the temperature $T$) controlling the entropic level of the distribution. This formalism enables the computation of new distances or dissimilarities, interpolating between the shortest-path and the resistance distance, which have been shown to perform well in clustering and classification tasks. In this work, the bag-of-paths formalism is extended by adding two independent equality constraints fixing starting and ending nodes distributions of paths (margins). When the temperature is low, this formalism is shown to be equivalent to a relaxation of the optimal transport problem on a network where paths carry a flow between two discrete distributions on nodes. The randomization is achieved by considering free energy minimization instead of traditional cost minimization. Algorithms computing the optimal free energy solution are developed for two types of paths: hitting (or absorbing) paths and non-hitting, regular, paths, and require the inversion of an $n \times n$ matrix with $n$ being the number of nodes. Interestingly, for regular paths on an undirected graph, the resulting optimal policy interpolates between the deterministic optimal transport policy ($T \rightarrow 0^{+}$) and the solution to the corresponding electrical circuit ($T \rightarrow \infty$). Two distance measures between nodes and a dissimilarity between groups of nodes, both integrating weights on nodes, are derived from this framework.Comment: Preprint paper to appear in Network Science journal, Cambridge University Pres

Sparse Randomized Shortest Paths Routing with Tsallis Divergence Regularization

This work elaborates on the important problem of (1) designing optimal randomized routing policies for reaching a target node t from a source note s on a weighted directed graph G and (2) defining distance measures between nodes interpolating between the least cost (based on optimal movements) and the commute-cost (based on a random walk on G), depending on a temperature parameter T. To this end, the randomized shortest path formalism (RSP, [2,99,124]) is rephrased in terms of Tsallis divergence regularization, instead of Kullback-Leibler divergence. The main consequence of this change is that the resulting routing policy (local transition probabilities) becomes sparser when T decreases, therefore inducing a sparse random walk on G converging to the least-cost directed acyclic graph when T tends to 0. Experimental comparisons on node clustering and semi-supervised classification tasks show that the derived dissimilarity measures based on expected routing costs provide state-of-the-art results. The sparse RSP is therefore a promising model of movements on a graph, balancing sparse exploitation and exploration in an optimal way

Randomized Shortest Paths with Net Flows and Capacity Constraints

This work extends the randomized shortest paths (RSP) model by investigating the net flow RSP and adding capacity constraints on edge flows. The standard RSP is a model of movement, or spread, through a network interpolating between a random-walk and a shortest-path behavior [30, 42, 49]. The framework assumes a unit flow injected into a source node and collected from a target node with flows minimizing the expected transportation cost, together with a relative entropy regularization term. In this context, the present work first develops the net flow RSP model considering that edge flows in opposite directions neutralize each other (as in electric networks), and proposes an algorithm for computing the expected routing costs between all pairs of nodes. This quantity is called the net flow RSP dissimilarity measure between nodes. Experimental comparisons on node clustering tasks indicate that the net flow RSP dissimilarity is competitive with other state-of-the-art dissimilarities. In the second part of the paper, it is shown how to introduce capacity constraints on edge flows, and a procedure is developed to solve this constrained problem by exploiting Lagrangian duality. These two extensions should improve significantly the scope of applications of the RSP framework

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

The SIB Swiss Institute of Bioinformatics (www.isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia and industry. These solutions allow life scientists to turn the exponentially growing amount of data into knowledge. Here, we provide an overview of SIB's resources and competence areas, with a strong focus on curated databases and SIB's most popular and widely used resources. In particular, SIB's Bioinformatics resource portal ExPASy features over 150 resources, including UniProtKB/Swiss-Prot, ENZYME, PROSITE, neXtProt, STRING, UniCarbKB, SugarBindDB, SwissRegulon, EPD, arrayMap, Bgee, SWISS-MODEL Repository, OMA, OrthoDB and other databases, which are briefly described in this article